Chapter 19 · Evidence, ethics and publishing

How do you combine many studies?

Systematic reviews, meta-analysis, forest and funnel plots, and levels of evidence.

39 TNMGRMU questions answered hereset 63 times, 1993–2025

The problem first

You are an Anaesthesiology resident presenting a seminar on a new antiemetic. You found six trials through Google. Three showed a significant reduction in postoperative nausea and vomiting (PONV) and three did not, so you conclude that “the evidence is conflicting”.

The consultant asks one question.

“How did you choose which studies to cite, and what did the pooled result show?”

Start here

Why not trust one trial, or one review article?

One trial can be too small to show an effect. A review article can cite only the studies that agree with its author. A systematic review finds all the studies on a question by a method written in advance, and a meta-analysis combines their numbers.

Narrative reviewthe author picks the studies12 studies exist. 3 are cited,the ones that support the argument.Systematic reviewevery study found is checkedunpublished,from registers14 found, including 2 unpublished.6 meet criteria written before the search (red).
A systematic review answers a focused question by searching for all relevant studies, selecting them with criteria set in advance, appraising them and combining them. A meta-analysis is the statistical step that pools their results into one estimate. A systematic review can be done without a meta-analysis, when the studies are too different to combine.

Comparison

Systematic review or narrative review: what is the difference?

Both summarise studies. They differ in how the studies are found and chosen.

FeatureSystematic reviewNarrative (traditional) review
QuestionOne focused question, often in PICO formBroad topic
ProtocolWritten, and registered (for example in PROSPERO), before the searchUsually none
SearchSeveral databases and trial registers, with the full search strategy reportedNot stated, or the author’s own collection
SelectionEligibility criteria set in advance, applied by two reviewersChosen by the author
AppraisalRisk of bias assessed for every study with a named toolVariable or none
SynthesisTables, often a meta-analysisDescriptive
Reproducible?Yes, another team can repeat itNo
ReportingPRISMA 2020No standard
Main riskMissing unpublished studiesSelection bias by the author

Steps

How do you do a systematic review?

Each step is fixed in the protocol before you look at any results.

  1. Frame the question with PICO: patients, intervention, comparison, outcome, and the study designs you will accept. For a question about an exposure rather than a treatment, the same frame is written as PECO: population, exposure, comparator, outcome (Morgan and colleagues, 2018).
  2. Write the protocol and register it. PROSPERO, the international register run by the Centre for Reviews and Dissemination at York, is free. Its developers advised registering before formal screening starts.
  3. Search several databases (for example PubMed and the Cochrane Library), trial registers such as CTRI and ClinicalTrials.gov, and reference lists. Record the full search strategy and the date of each search. See the literature search chapter.
  4. Screen titles and abstracts, then full reports, against the eligibility criteria. Two reviewers work independently and settle disagreements.
  5. Extract data on a piloted form: study design, patients, intervention, outcomes and results.
  6. Assess risk of bias in every included study. Use RoB 2 for randomised trials and ROBINS-I for non-randomised studies of interventions.
  7. Synthesise: a meta-analysis if the studies are similar enough, otherwise a structured description in tables.
  8. Assess certainty of the evidence for each outcome, for example with GRADE, and look for missing studies.
  9. Report with the PRISMA 2020 checklist and flow diagram, and update the review when new trials appear.

PRISMA 2020

How do you show which studies you kept?

The flow diagram accounts for every record, from the search to the final set of studies. PRISMA 2020 item 16a asks for this, ideally as a diagram.

Records identified: 1,300databases 1,248 · trial registers 52Records screened: 988title and abstractReports sought in full: 86Full reports assessed: 82Studies included: 6Duplicates removed: 312Records excluded: 902Reports not retrieved: 4Reports excluded: 76wrong population 30wrong comparison 21wrong outcome 16not randomised 9
A teaching example with made-up counts. PRISMA 2020 distinguishes records (a title and abstract in a database), reports (a document such as a journal article or registry entry) and studies (one investigation, which may have several reports). Reasons for excluding full reports must be given.

Interactive

Change the counts and see which boxes no longer add up

Each box in the flow diagram follows from the boxes above it, so an error in one count breaks the arithmetic of the next box.

Try this: change "Records excluded" from 902 to 900 and see which boxes no longer add up.

Teaching example with the made-up counts from the flow diagram above. Every number can be changed.

6 of 6relations between boxes add up
  • ✓ Records identified = databases + trial registers. 1,248 + 52 = 1,300.
  • ✓ Records screened = records identified − duplicates removed. 1,300 − 312 = 988.
  • ✓ Reports sought = records screened − records excluded. 988 − 902 = 86.
  • ✓ Reports assessed = reports sought − reports not retrieved. 86 − 4 = 82.
  • ✓ Reports excluded = the sum of the reasons. 30 + 21 + 16 + 9 = 76.
  • ✓ Studies included = reports assessed − reports excluded. 82 − 76 = 6.

In this example each included study has one report, so reports assessed minus reports excluded also gives the number of studies. PRISMA 2020 distinguishes reports from studies: when one study has several reports, there are fewer studies than reports.

Records identified: 1,300databases 1,248 · trial registers 52Records screened: 988Reports sought in full: 86Full reports assessed: 82Studies included: 6Duplicates removed: 312Records excluded: 902Reports not retrieved: 4Reports excluded: 76wrong population 30wrong comparison 21wrong outcome 16not randomised 9

The formula

How are the results of several trials combined?

Not by adding the patients together, and not by counting how many trials were significant. Each trial's result is weighted by its precision, so a large trial counts for more than a small one.

weight w = 1 ÷ SE²

pooled log RR = Σ(w × log RR) ÷ Σw

RR
risk ratio in each trial: risk with drug ÷ risk with placebo
log RR
natural logarithm of the RR. Ratios are pooled on the log scale, then converted back
SE
standard error of log RR = √(1/a − 1/n₁ + 1/c − 1/n₂), where a of n₁ patients had the event on drug and c of n₂ on placebo
Σ
sum over all trials

This is the inverse-variance, fixed-effect method. Teaching example, Trial A in the forest plot below: 12 of 50 patients had PONV on the drug (0.24) and 20 of 50 on placebo (0.40).

RR = 0.24 ÷ 0.40 = 0.60 → log RR = −0.511

SE² = 1/12 − 1/50 + 1/20 − 1/50 = 0.0933 → w = 10.7

Repeat for all six trials, then combine:

Σw = 100.7, Σ(w × log RR) = −41.96 → pooled log RR = −0.417 → RR 0.66

SE = 1 ÷ √100.7 = 0.0997 → 95% CI = e^(−0.417 ± 1.96 × 0.0997) = 0.54 to 0.80

Other pooling methods exist, such as Mantel-Haenszel and Peto for yes/no outcomes. Software (RevMan, R) does the arithmetic, but you must be able to explain it.

Why not add up the patients from all the trials?

Adding the events and patients of every trial as if they came from one large trial can reverse the answer when the trials allocate patients unequally and have different baseline risks. Teaching example with made-up numbers.

TrialDrug: deaths/patientsControl: deaths/patientsRisk ratio
Trial 1 (high-risk patients)40/200 (20%)12/50 (24%)0.83
Trial 2 (low-risk patients)5/50 (10%)24/200 (12%)0.83
Patients added together45/250 (18%)36/250 (14.4%)1.25
Meta-analysis (fixed effect)0.83 (0.51 to 1.35)

Both trials show about 17% lower risk with the drug. Added together, the drug appears harmful, because most drug patients came from the high-risk trial and most control patients from the low-risk trial. A meta-analysis compares drug and control within each trial first, then pools the within-trial results. Altman and Deeks (2002) showed that treating the data as if they came from one trial is prone to this bias, Simpson's paradox, when groups are imbalanced within trials.

Reading the result

How do you read a forest plot?

One row per study, one diamond for the pooled result, and a vertical line where the drug has no effect.

StudyDrugPlaceboWeightRisk ratio (95% CI)no effectTrial A12/5020/5010.6%0.60 (0.33 to 1.09)Trial B30/15045/15023.5%0.67 (0.45 to 1.00)Trial C8/4010/405.7%0.80 (0.35 to 1.82)Trial D45/30070/30033.3%0.64 (0.46 to 0.90)Trial E15/8018/8010.2%0.83 (0.45 to 1.54)Trial F20/10034/10016.7%0.59 (0.36 to 0.95)Pooled (fixed effect)0.66 (0.54 to 0.80)I² = 0%0.250.512← favours drugfavours placebo →
Teaching example with made-up data. Square: the trial’s risk ratio. Its area is proportional to the trial’s weight. Horizontal line: its 95% confidence interval. Vertical dashed line: RR 1, no difference. Diamond: the pooled estimate, with its width showing the confidence interval. Trials A, C and E cross the line of no effect on their own. The pooled RR of 0.66 (0.54 to 0.80) does not cross it: the drug reduced the risk of PONV by 34%.

Read a forest plot in this order: the outcome and effect measure, which side favours which treatment, the diamond and whether it crosses the line, the heterogeneity statistic (I²), and then the largest squares, which carry the most weight.

Heterogeneity

Do the studies agree with each other?

If the trials are measuring the same effect, their confidence intervals should overlap. When they do not, the difference between studies is more than chance, and one pooled number may hide it.

Results agreeTrial ATrial BTrial CTrial DTrial ETrial F0.10.250.512I² = 0%Results disagreeTrial GTrial HTrial JTrial KTrial LTrial M0.10.250.512I² = 78%
Both panels are made-up teaching examples on the same scale. On the right, some trials show a large benefit and others none. A single diamond would not describe any of them well.

I² = 100% × (Q − df) ÷ Q

Q
Cochran’s Q: the weighted sum of squared differences between each study’s result and the pooled result
df
degrees of freedom = number of studies − 1
I²
the percentage of the variation between studies that is due to heterogeneity rather than chance. Negative values are set to 0%

Left panel: Q = 1.12 with df = 5. Q is smaller than df, so I² = 0%. Right panel: Q = 22.90, df = 5, so I² = 100% × (22.90 − 5) ÷ 22.90 = 78%. Higgins and colleagues (2003) tentatively called I² values of 25%, 50% and 75% low, moderate and high.

The Q test has low power when there are few studies, so a non-significant Q does not show that the studies agree. When heterogeneity is present, look for its cause: different patients, doses, follow-up or risk of bias. Explore it with subgroup analysis or meta-regression planned in the protocol, check with sensitivity analysis whether the result changes when some studies are left out, use a random-effects model, or do not pool.

Every extra subgroup analysis adds a chance of a false-positive finding. The Practical Statistics chapter on multiple comparisons explains how this risk grows with the number of tests and how to allow for it.

Comparison

Fixed effect or random effects: which model?

The two models make different assumptions about what the trials are estimating, and so they weight the trials differently.

Trial K (n = 400)30.9%20.0%Trial H (n = 240)27.1%19.6%Trial M (n = 300)21.0%18.9%Trial G (n = 120)8.7%15.2%Trial L (n = 90)7.5%14.4%Trial J (n = 160)4.8%11.9%0%10%20%30%
Fixed-effect weightRandom-effects weight
The six disagreeing trials from the previous figure (made-up). The random-effects model adds the between-study variance (τ² = 0.20) to every trial’s variance, so small trials gain weight and large trials lose it. Fixed effect: RR 0.80 (0.67 to 0.96). Random effects (DerSimonian and Laird): RR 0.64 (0.42 to 0.97), with a wider interval.
FeatureFixed effectRandom effects
AssumesEvery study estimates the same true effectStudies estimate different but related effects, spread around an average
Differences between studiesDue to chance aloneChance plus real differences (τ²)
WeightsInverse of each study’s varianceInverse of (study variance + τ²), so weights are more equal
Confidence intervalNarrowerWider when heterogeneity is present
Pooled estimate meansThe common effectThe average of the distribution of effects
Use whenStudies are clinically similar and I² is lowStudies differ in patients or settings
CautionOverconfident if the studies really differGives small studies more weight, which matters if small studies are biased

Interactive

Remove trials or switch the model, and watch the pooled risk ratio and I² change

The same inverse-variance and DerSimonian-Laird calculations as above, repeated for the trials you keep.

Try this: remove Trial D, the largest trial, and watch the diamond become wider. Then choose the trials that disagree and switch between fixed effect and random effects.

Teaching example with made-up trials of a drug against placebo (events / patients). At least two trials must stay in.

Set of trials
Model
Trials included
0.66pooled risk ratio, fixed effect

95% CI 0.54 to 0.80 · Q = 1.12, df = 5, p = 0.95 · I² = 0% · τ² = 0.00

With 6 trials, the pooled risk ratio is 0.66 (0.54 to 0.80). The confidence interval does not cross 1: the drug reduced the risk by 34%. I² is 0%, below 25%.

StudyDrugPlaceboWeightRR (95% CI)no effectTrial A12/5020/5010.6%0.60 (0.33 to 1.09)Trial B30/15045/15023.5%0.67 (0.45 to 1.00)Trial C8/4010/405.7%0.80 (0.35 to 1.82)Trial D45/30070/30033.3%0.64 (0.46 to 0.90)Trial E15/8018/8010.2%0.83 (0.45 to 1.54)Trial F20/10034/10016.7%0.59 (0.36 to 0.95)Pooled (fixed)0.66 (0.54 to 0.80)0.10.250.512← favours drugfavours placebo →

Effect measures

What is pooled when trials measure the outcome in different ways?

Each trial's result must be expressed as the same effect measure before the results can be pooled.

Type of outcomeEffect measureValue for no effect
Yes or no (death, PONV)Risk ratio, odds ratio, risk difference1 for ratios, 0 for the difference
Measurement, all trials on the same scaleMean difference0
Measurement, trials on different scalesStandardised mean difference0
Time to an eventHazard ratio1

The standardised mean difference (SMD) divides each trial's mean difference by the pooled SD in that trial. The result is in SD units, so trials that used different scales can be combined, provided the scales measure the same thing.

SMD = (mean with treatment − mean with control) ÷ pooled SD

Trial on a 0–10 pain scale: (3.2 − 4.1) ÷ 1.90 = −0.47

Trial on a 0–100 pain scale: (32 − 45) ÷ 21.0 = −0.62

Teaching examples with made-up numbers: SDs 1.8 and 2.0 with 40 patients per group, and SDs 20 and 22 with 50 per group. The mean differences of −0.9 and −13 points cannot be pooled directly, but −0.47 and −0.62 SD can. When a trial reports the median and interquartile range instead of the mean and SD, Wan and colleagues (2014) described how to estimate the mean and SD from these and the sample size.

Publication bias

Are some studies missing?

Trials with positive results are more likely to be published, published quickly, in English, more than once, and cited. If small negative trials stay unpublished, a meta-analysis of what is published overestimates the effect.

0.250.5124Risk ratio (log scale)00.20.40.6Standard error (large trials at the top)all 25: 0.99published 10: 0.85dashed: small trials withno benefit, unpublished
Teaching example with made-up data for a drug that has no real effect. A funnel plot shows each study’s effect estimate against its standard error. Large trials sit near the top close to the true value. Small trials scatter widely at the bottom, equally on both sides, so without bias the dots form a symmetrical inverted funnel. Here 15 small trials that found no benefit were not published. The 10 published trials give a pooled RR of 0.85 (0.76 to 0.96), a false benefit. All 25 give 0.99 (0.90 to 1.09).

Asymmetry does not prove publication bias. Heterogeneity, lower methodological quality of small studies, and chance can also produce it. Egger’s regression test measures asymmetry, but tests for funnel plot asymmetry should not be used when a meta-analysis has fewer than 10 studies, because their power is too low (Sterne et al., 2011).

Rosenthal (1979) called this the file drawer problem. In its extreme form, journals publish the 5% of studies that found an effect by chance, while the studies with non-significant results stay in the researchers' file drawers.

Interactive

Hide small trials that found no benefit, and watch the pooled risk ratio move

The same 25 made-up trials as the funnel plot above.

Try this: move the slider to "SE 0.2 or more" and compare the pooled risk ratio with the result for all 25 trials.

Teaching example with made-up data: 25 trials of a drug that has no real effect. Pooled by the fixed-effect, inverse-variance method.

none

Further right: trials of larger size (smaller SE) are also left out when they found no benefit

0.99pooled risk ratio of the 25 published trials

95% CI 0.90 to 1.09 · 0 of 25 unpublished · all 25 trials: 0.99 (0.90 to 1.09)

All 25 trials are published. The dots form a symmetrical funnel, and the pooled risk ratio is close to 1: no effect.

0.250.5124Risk ratio (log scale)00.20.40.6Standard error (large trials at the top)all 25: 0.99filled: publisheddashed: unpublished

Comparison

Published summary results, or the data of every patient?

Most meta-analyses pool the summary result of each trial. An individual patient data (IPD) meta-analysis obtains the raw data of every participant from the trial teams.

FeatureAggregate data meta-analysisIndividual patient data meta-analysis
DataEach trial's summary result, such as a risk ratio and its standard error, from publications or authorsEach participant's data from every trial
Definitions and analysisLimited to what each trial reportedThe same outcome definitions and analysis can be applied in every trial
Patient characteristicsOnly trial-level averages, such as mean age, can be related to the effect, which risks ecological biasCharacteristics such as age or stage can be related to the effect within trials
ResourcesLess time and costSubstantial time and cost to contact authors, obtain the data and check them
ExampleThe antiemetic forest plot in this chapterThe tamoxifen overview of 20 trials (Medical Oncology tab below)

The analysis must keep each trial's patients together. Riley and colleagues (2010) stated that it is inappropriate to analyse individual participant data as if they all came from a single study. Either each trial is analysed first and the results are then pooled (two step), or all trials are modelled together while allowing for the trial each patient came from (one step).

Merits and limitations

What can a meta-analysis do, and what can it not do?

MeritsLimitations
Greater power and precision than any single small studyOnly as reliable as the studies included
Settles apparently conflicting resultsPublication and other reporting biases
Estimates the size of an effect, with a confidence intervalHeterogeneity: combining different patients, doses or outcomes
Examines consistency across settings and subgroupsSubgroup findings across studies are observational and prone to false positives
Transparent and reproducible when it follows a protocolResults can depend on choices of model, outcome and inclusion criteria
Identifies gaps and helps plan and size new trialsPooled results may be contradicted by a later large trial
Cheaper and quicker than a new large trialCannot give individual patient answers unless individual patient data are used

Quality and reporting

How do you judge a published systematic review?

Two different questions: was it reported completely, and was it done well? Different checklists answer each.

FeatureReporting guidelineQuality (critical appraisal) tool
Question it answersDid the authors report what they did?Can you trust the review’s conclusions?
Main toolPRISMA 2020 (27 items). MOOSE for meta-analyses of observational studiesAMSTAR 2 (16 items) for reviews of randomised and non-randomised studies
Used byAuthors and journal editorsReaders, guideline panels, examiners
OutputA completed checklist with page numbersOverall confidence: high, moderate, low or critically low
WarningPRISMA 2020 is not a tool to assess the conduct or quality of a reviewAMSTAR 2 should not be added up into a score

AMSTAR 2 critical domains. A critical flaw in any of these lowers confidence to low or critically low: protocol registered before the review (item 2), adequate literature search (item 4), justification for excluding individual studies (item 7), risk of bias of included studies (item 9), appropriate meta-analytical methods (item 11), risk of bias considered when interpreting the results (item 13), and assessment of publication bias (item 15).

To appraise a clinical practice guideline, use AGREE II (23 items and two overall assessments). General reporting guidelines are covered in the writing and referencing chapter.

Evidence-based medicine

Where do systematic reviews fit into patient care?

A systematic review supplies the research evidence. Evidence-based medicine is how you use it for one patient.

Sackett and colleagues (BMJ, 1996) defined it: “Evidence based medicine is the conscientious, explicit, and judicious use of current best evidence in making decisions about the care of individual patients.” They added that good doctors use both clinical expertise and the best external evidence, “and neither alone is enough”.

Best externalresearch evidenceIndividualclinical expertisePatient’s valuesand choicethe decisionfor this patient
The practice model. Sackett described EBM as integrating the best external evidence with individual clinical expertise and patients’ choice. Haynes, Devereaux and Guyatt (2002) revised the model to give more weight to the patient’s clinical circumstances and preferences, and made it part of clinical expertise to combine them with the research evidence.

The five steps (Sicily statement, 2005)

  1. Ask: turn the uncertainty into an answerable question (PICO).
  2. Acquire: search systematically for the best available evidence.
  3. Appraise: judge its validity, clinical relevance and applicability.
  4. Apply: use the results in practice with this patient.
  5. Assess: evaluate your own performance.

Tools used at each step

StepTools
AskPICO format
AcquirePubMed with MeSH terms, Cochrane Library, trial registers, guideline databases
AppraiseLevels of evidence (OCEBM 2011), GRADE, RoB 2, ROBINS-I, AMSTAR 2, AGREE II, critical appraisal checklists
ApplyAbsolute risk reduction and number needed to treat, likelihood ratios for tests, decision analysis, shared decision-making
AssessClinical audit, outcome review

Decision analysis

How do you weigh the chance of disease against what each outcome is worth?

A decision tree sets out each choice, the probability of each result and a value, called a utility, for each final outcome. The choice with the higher expected utility is preferred.

Decision treetreatdo not treat0.30.7disease0.90no disease0.95EU 0.9350.30.7disease0.50no disease1.00EU 0.850Expected utility0.500.751.000%50%100%probability of diseasetreatdo not treat0.9350.85011.1%
Teaching example with made-up numbers. Left: the decision tree for a patient with a 30% probability of a treatable disease. Right: the expected utility of each choice at every probability of disease. The lines cross at 11.1%, the treatment threshold.

A utility is a number from 0 (death) to 1 (full health) that states how much an outcome is worth, ideally to the patient. The expected utility of a choice is the sum, over its outcomes, of each outcome's probability multiplied by its utility.

Disease, treated
utility 0.90
Disease, not treated
utility 0.50
No disease, treated (side effects only)
utility 0.95
No disease, not treated
utility 1.00

Treat: 0.3 × 0.90 + 0.7 × 0.95 = 0.935

Do not treat: 0.3 × 0.50 + 0.7 × 1.00 = 0.850

Treating gives the higher expected utility at a 30% probability of disease. The two choices are equal at the treatment threshold.

Threshold = harm ÷ (harm + benefit) = 0.05 ÷ (0.05 + 0.40) = 11.1%

benefit
the gain from treating a patient who has the disease, 0.90 − 0.50 = 0.40
harm
the loss from treating a patient who does not, 1.00 − 0.95 = 0.05

Below 11.1% the expected utility is higher without treatment, and above it with treatment. Repeating the calculation over a range of probabilities and utilities, as the right panel does, is a sensitivity analysis. It shows whether the choice changes within the plausible range. A test result that moves the probability across the threshold changes the decision, which is the idea behind the threshold approach in the diagnostic tests chapter.

Levels of evidence

Which kind of study should you believe more?

Designs that are less open to bias rank higher. But a well-done cohort study can give more certain evidence than a flawed trial, so modern schemes let the level move.

Systematic reviewsand meta-analysesRandomisedcontrolled trialsCohort andcase–control studiesCase series,basic scienceTraditional pyramidRandomisedcontrolled trialsCohort andcase–control studiesCase series,basic sciencesystematic review:the lens for reading studieswavy lines:rated upor downRevised pyramid (Murad et al., 2016)
The traditional pyramid puts systematic reviews and meta-analyses on top. Murad and colleagues (2016) proposed two changes: wavy lines, because GRADE can rate the certainty of evidence up or down regardless of design, and systematic reviews taken off the top and used as the lens through which the other studies are appraised and applied.

Oxford CEBM 2011 levels: “Does this intervention help?”

LevelEvidence
1Systematic review of randomized trials or n-of-1 trials
2Randomized trial or observational study with dramatic effect
3Non-randomized controlled cohort/follow-up study
4Case-series, case-control studies, or historically controlled studies
5Mechanism-based reasoning

The 2011 table has separate rows for prevalence, diagnosis, prognosis, harms and screening. A level may be graded down for study quality, imprecision, indirectness, inconsistency or a very small effect, and graded up for a large effect.

GRADE (2008)

GRADE rates the quality (certainty) of evidence for each outcome as high, moderate, low or very low, and each recommendation as strong or weak. Evidence from randomised trials starts high and is rated down for study limitations, inconsistency, indirectness, imprecision and reporting bias. Observational evidence starts low and can be rated up for a very large effect, a dose-response relation, or when all plausible biases would reduce the apparent effect.

Decide

Which kind of review fits your question?

Answer a few questions. Each answer names the review type and its reporting guideline.

What do you want the review to do?

Which review: all possible answers
  • Systematic review with meta-analysis: Pool the results with inverse-variance weights, check heterogeneity with I², and report with PRISMA 2020 (MOOSE for observational studies).
  • Network meta-analysis: Compares several treatments at once, using direct and indirect comparisons. Report with the PRISMA extension for network meta-analyses (32 items). Involve a statistician.
  • Individual patient data meta-analysis: The trial teams share every patient’s data, which allows the same analysis in every trial and subgroup analyses by patient features. The breast cancer overviews of adjuvant tamoxifen are an example.
  • Systematic review without meta-analysis: Search, screen and appraise in the same way, then describe the results study by study in tables. Do not force a pooled number.
  • Scoping review: Maps the evidence, concepts and gaps on a topic. It follows a systematic approach but usually does not pool results. Report with PRISMA-ScR (20 essential and 2 optional items).
  • Overview of systematic reviews (umbrella review): Each included study is itself a systematic review. Appraise each one with AMSTAR 2.
  • Narrative review: Acceptable for background, but the author chooses what to cite. Do not use it to decide whether a treatment works.

By specialty

Systematic review problems by specialty

Several small antiemetic trials each fail to show a clear benefit on PONV. Your guide says the drug does not work.

Pooled together, trials that are each too small can show a clear effect. Look for a meta-analysis before concluding "no effect".

Common myths

Common mistaken beliefs

  • Myth: A meta-analysis is always the highest level of evidence.

    It is only as reliable as the studies in it. A meta-analysis of non-randomised studies does not carry the weight of one of well-conducted randomised trials.

  • Myth: Many small trials combined are as trustworthy as one large trial.

    Small trials are more open to bias and to non-publication. Egger and colleagues (1997) found that when a meta-analysis disagreed with a later large trial, the meta-analysis had shown the larger effect every time.

  • Myth: Count the significant trials: 3 positive and 3 negative means the evidence is conflicting.

    Vote counting ignores trial size. Six trials that are each too small can pool to a clear result.

  • Myth: A non-significant heterogeneity test means the studies agree.

    The Q test has low power when there are few studies. Look at I² and at the forest plot.

  • Myth: An asymmetrical funnel plot proves publication bias.

    Heterogeneity, poor quality of small studies and chance can also cause asymmetry.

  • Myth: A review that follows PRISMA is a good review.

    PRISMA checks reporting, not conduct. Use AMSTAR 2 to judge quality.

Why this matters to you

Five consequences of not understanding systematic reviews

  1. A biased review of literature

    A thesis review that cites only supportive studies is a narrative review, and the examiner will ask how the studies were chosen.

  2. An unregistered review

    A systematic review thesis started without a registered protocol cannot show that its methods were fixed before the results were known.

  3. Questions you cannot answer at the viva

    You cannot say what the diamond means, why a large trial has a larger square, or what I² = 78% implies.

  4. Misreading papers

    You quote a pooled estimate without noticing that the trials disagree, or that small negative trials are missing.

  5. Treatment that does not work

    Intravenous magnesium after myocardial infarction looked beneficial in a meta-analysis of small trials, and ISIS-4 found no benefit.

History

History of systematic reviews and meta-analysis

  1. 1904

    Karl Pearson

    Published a report in the BMJ that combined results from several studies of typhoid (enteric fever) inoculation into a pooled estimate, without an estimate of its uncertainty.

  2. 1976

    Gene Glass

    Coined the term "meta-analysis" for the statistical analysis of a large collection of results from individual studies, to integrate the findings.

  3. 1979

    Robert Rosenthal

    Described the "file drawer problem": studies with non-significant results that stay unpublished.

  4. 1986

    Rebecca DerSimonian and Nan Laird

    Described a random-effects approach that allows for differences in treatment effect between trials. It is still the simplest random-effects method.

  5. 1992

    Evidence-Based Medicine Working Group

    Published "Evidence-based medicine. A new approach to teaching the practice of medicine" in JAMA.

  6. 1993

    The Cochrane Collaboration

    Established in Oxford to prepare systematic reviews of randomised trials of health care. It is named after the Scottish researcher Archie Cochrane.

  7. 1996

    David Sackett and colleagues

    Defined evidence-based medicine in the BMJ as the use of current best evidence in decisions about individual patients.

  8. 1997

    Matthias Egger and colleagues

    Proposed a regression test for funnel plot asymmetry, and found asymmetry suggesting bias in 38% of meta-analyses from leading journals.

  9. 1999–2000

    QUOROM and MOOSE

    Reporting standards for meta-analyses of randomised trials (QUOROM, 1999) and of observational studies (MOOSE, 2000).

  10. 2002

    Julian Higgins and Simon Thompson

    Proposed I² to measure how much of the variation between studies is due to heterogeneity.

  11. 2009

    PRISMA statement

    Replaced QUOROM as the reporting guideline for systematic reviews and meta-analyses.

  12. 2011

    PROSPERO

    The international prospective register of systematic reviews was launched in February 2011 by the Centre for Reviews and Dissemination, University of York.

  13. 2017

    AMSTAR 2

    Revised critical appraisal tool for systematic reviews that include randomised or non-randomised studies, with 16 items.

  14. 2021

    PRISMA 2020

    Updated reporting guideline with a 27-item checklist and new flow diagrams, published in the BMJ by Page and colleagues.

Guidelines

Systematic reviews in guidelines

PRISMA 2020, item 16a

“Describe the results of the search and selection process, from the number of records identified in the search to the number of studies included in the review, ideally using a flow diagram.”

PRISMA 2020, item 24a

“Provide registration information for the review, including register name and registration number, or state that the review was not registered.”

PRISMA 2020, item 13d

If meta-analysis was performed, describe “the model(s), method(s) to identify the presence and extent of statistical heterogeneity, and software package(s) used.”

AMSTAR 2 (2017)

16 items. Overall confidence is rated high, moderate, low or critically low from weaknesses in critical domains. It is not intended to generate an overall score.

MOOSE (2000)

Checklist for reporting meta-analyses of observational studies in epidemiology, covering background, search strategy, methods, results, discussion and conclusion.

Funnel plot tests (Sterne et al., BMJ 2011)

Tests for funnel plot asymmetry should not be used when there are fewer than 10 studies in the meta-analysis.

Reading a paper

Five checks on any systematic review or meta-analysis

  • Was the protocol registered (PROSPERO or similar) before the search, and did the review follow it?
  • Did the search cover several databases and trial registers, without language restrictions?
  • Was risk of bias assessed for each study, and did it affect the conclusions?
  • Do the trials agree? Look at the forest plot and I² before trusting the diamond.
  • Were funnel plots or other checks used for missing studies, and were there at least 10 studies for a test?

Why is it called that?

Word surgery

“Review”

In everyday speech

An opinion piece, like a film or book review.

In research

A summary of studies. A systematic review follows a written protocol that another team could repeat.

“Heterogeneity”

In everyday speech

A mixture of different things.

In research

Variation between study results that is more than chance would produce, measured by Q and I².

“Evidence”

In everyday speech

Proof, as in a court case.

In research

Results of studies, which vary in certainty from high to very low. Evidence alone does not make the decision.

Memory trick

Forest plot: squares are studies, the size of the square is its weight, the diamond is the pooled result, and the dashed line is no effect.

Meta-analysis

Greek meta "after, beyond" + analysis "a breaking up, a loosening"

Glass used the term in 1976 for a statistical analysis of the results of many separate analyses.

Systematic

Greek systematikos: "combined in a whole"

Done by a fixed, written method, so that the whole body of evidence is covered.

Review

Latin revidere: re- "again" + videre "to see"

Looking again at studies that have already been done.

Heterogeneity

Greek heteros "different" + genos "kind"

Studies that differ in their results, patients or methods.

Synthesis

Greek synthesis: "a putting together"

Combining the results of the included studies, with or without a meta-analysis.

Funnel plot

funnel: Latin infundibulum, from infundere "to pour in"

Without bias, the dots form the shape of an upside-down funnel: narrow at the top, wide at the bottom.

Forest plot

Named because the plot looks like a forest of lines (Lewis and Clarke, 2001)

The earliest known printed use may be a review published in 1996. A joke that it was named after the researcher Pat Forrest is not the origin.

Exam answers

Model answer outlines

Meta-analysis: short note, and its role in research

MCh Surgical Oncology 2004, 2010, 2011, 2019, 2022, 2023 · MD Pharmacology 2017, 2019, 2022 · MD Radio Therapy 2021, 2022 · MD Community Medicine 2016, 2022, and undated · DM Medical Oncology 1993, 1996, 2009, 2022 · Ph.D. RM 2015, 2022 · DM Neurology 1997
  • Definition: a statistical method that combines the results of several independent studies on the same question into one pooled estimate. Term coined by Gene Glass (1976).
  • Basis: usually done within a systematic review, so that the studies are found and chosen without bias.
  • Method: each study’s effect (RR, OR, mean difference) is weighted by the inverse of its variance. Fixed-effect or random-effects model. Heterogeneity measured with Q and I².
  • Display: forest plot for results, funnel plot for possible missing studies.
  • Effect measures: risk ratio, odds ratio or risk difference for yes/no outcomes, mean difference or standardised mean difference for measurements, hazard ratio for time to an event.
  • Do not add patients across trials as if they came from one trial. Imbalance within trials can reverse the result (Simpson's paradox, Altman and Deeks 2002).
  • Role in research: increases power and precision, settles conflicting results, shows consistency across settings, identifies gaps, provides the effect size and SD for planning new trials, and informs guidelines (GRADE).
  • Limitations: publication bias, heterogeneity, quality of included studies, and possible contradiction by a later large trial.
  • Reporting and appraisal: PRISMA 2020 (MOOSE for observational studies) and AMSTAR 2.

Where a paper set this as one part of a longer question (with prion disease, or with oncology drugs), those other parts belong to the specialty syllabus, not to research methodology.

What is systematic review and meta-analysis? Process, merits and limitations (with multivariate analysis and PLS regression)

DM Pulmonary Medicine 2024 · Ph.D. RM 2013

Systematic review: a review of a clearly formulated question that uses systematic, explicit, pre-specified methods to find, select and appraise all relevant studies. Meta-analysis: the statistical pooling of their results.

  1. Question (PICO) and protocol, registered in PROSPERO.
  2. Comprehensive search, screening by two reviewers, PRISMA flow diagram.
  3. Data extraction and risk of bias (RoB 2, ROBINS-I).
  4. Choose effect measure. Pool by inverse-variance weighting. Fixed effect assumes one true effect, random effects assumes a distribution of effects.
  5. Heterogeneity: Q, I², subgroup analysis, meta-regression, sensitivity analysis.
  6. Publication bias: funnel plot, Egger’s test (at least 10 studies).
  7. Certainty of evidence with GRADE. Report with PRISMA 2020.

Assumptions: the studies address the same question, their results are independent, and the included studies are a fair sample of all studies done.

Aggregate or individual patient data: most meta-analyses pool published summary results. An individual patient data meta-analysis obtains every participant's data, applies the same analysis to each trial, and must keep patients within their trials, by a two step or a one step analysis (Riley et al., 2010).

Merits and limitations: see the table in this chapter.

Multivariate analysis (part a): analysis of the relation between several variables at once, for example multiple or logistic regression with several predictors, to adjust for confounders. Partial least squares regression (part b): builds a small number of new components from many correlated predictors, chosen to explain as much of the outcome as possible, and regresses the outcome on them. It is used when predictors are many or highly correlated. See the correlation and regression chapter.

Steps in conducting a meta-analysis, with an example

DM Neonatology 2022 · MD Radio Therapy 2020 · Ph.D. RM 2019, 2020
  1. Define the question: in adults having surgery, does antiemetic X compared with placebo reduce postoperative nausea and vomiting?
  2. Write and register the protocol: eligibility (randomised trials, adults, any dose), outcomes, analysis plan.
  3. Search databases and registers. Screen. Record in a PRISMA flow diagram (teaching example: 1,300 records → 6 trials).
  4. Extract events and patients in each arm. Assess risk of bias with RoB 2.
  5. If a trial reports the median and interquartile range, estimate the mean and SD (Wan et al., 2014). If trials use different scales, pool the standardised mean difference.
  6. Calculate RR and its SE for each trial. Trial A: RR 0.60, log RR −0.511, SE² 0.0933, weight 10.7.
  7. Pool: Σw = 100.7, Σ(w × log RR) = −41.96, pooled RR 0.66 (95% CI 0.54 to 0.80).
  8. Check heterogeneity: Q = 1.12, df = 5, I² = 0%. A fixed-effect model is reasonable.
  9. Check for missing studies (funnel plot, not tested with only 6 trials) and do sensitivity analyses, for example excluding high risk-of-bias trials.
  10. Interpret: risk of PONV reduced by 34%. Rate certainty with GRADE. Report with PRISMA 2020.

All numbers are a made-up teaching example.

Sources of bias in meta-analysis, how heterogeneity is addressed, and pitfalls

MD Community Medicine 2023 · MCh Surgical Oncology 2008
Source of bias or pitfallWhat happensHow to deal with it
Publication biasNegative studies stay unpublishedSearch trial registers and grey literature. Funnel plot, Egger’s test
Time-lag, language, duplicate and citation biasPositive results are published faster, in English, more than once, and cited moreSearch without language limits. Remove duplicate reports of one study
Selective outcome reportingOnly favourable outcomes are reportedCompare with registered protocols
Poor quality of included studiesPooled result inherits their biasRoB 2 or ROBINS-I, sensitivity analysis excluding high-risk studies
HeterogeneityCombining different patients, doses or outcomesQ and I², random effects, subgroup analysis, meta-regression, or do not pool
Reviewer bias in selectionStudies chosen to fit a viewProtocol, pre-set criteria, two independent reviewers
Small-study effectsSmall trials show larger effectsCompare with the largest trials. Be careful with random effects
Ecological fallacy in meta-regressionStudy-level associations applied to patientsPlan subgroups in advance, or use individual patient data
File drawer problemStudies with non-significant results are never submitted (Rosenthal, 1979)Search trial registers, contact investigators
Adding patients across trialsUnequal allocation and baseline risk can reverse the result (Simpson's paradox)Compare within each trial, then pool

Systematic review: definition, steps of a good systematic review, and comparison with narrative review

MD Community Medicine 2022, 2024 · DM Neonatology 2020 · Ph.D. RM 2016

Definition: a review that answers a focused question by identifying, selecting, appraising and synthesising all relevant studies with explicit methods fixed in advance, so that it can be reproduced.

  1. Focused question (PICO) and eligibility criteria.
  2. Protocol registered in PROSPERO (PRISMA 2020 item 24a asks for registration details).
  3. Comprehensive search of several databases and registers, with the full strategy reported.
  4. Two independent reviewers screen records and full reports. PRISMA flow diagram.
  5. Data extraction on a piloted form.
  6. Risk of bias for each study (RoB 2, ROBINS-I).
  7. Synthesis: meta-analysis or structured narrative. Heterogeneity and publication bias.
  8. Certainty of evidence (GRADE) and conclusions for practice and research.
  9. Report with PRISMA 2020, keep the review updated.

Comparison with narrative review: use the table in the comparison section above (question, protocol, search, selection, appraisal, synthesis, reproducibility, reporting, main risk).

Forest plot and its interpretation

DM Neonatology 2012, 2023 · DM Medical Oncology 2019 · DM Endocrinology 2024
  1. Definition: a graph that shows the result of each study in a meta-analysis and the pooled result.
  2. Left columns: study names, raw data, weights.
  3. Square: point estimate of each study. Its area is proportional to the study’s weight.
  4. Horizontal line: 95% CI of each study. Arrows if it runs off the scale.
  5. Vertical line of no effect: at 1 for ratios (RR, OR, HR), at 0 for differences. A CI that crosses it is not statistically significant.
  6. Diamond: pooled estimate, its width is the pooled 95% CI.
  7. Axis: log scale for ratios, with labels showing which side favours which treatment.
  8. Heterogeneity: Q, its p-value and I² printed below.
  9. Interpretation: direction and size of the pooled effect, whether the diamond crosses no effect, consistency of studies, and weight of large studies. Teaching example: RR 0.66 (0.54 to 0.80), I² = 0%, a consistent 34% reduction.

The name refers to the plot looking like a forest of lines (Lewis and Clarke, BMJ 2001).

Funnel plot (and Kaplan-Meier curve)

DM Neonatology 2024

Funnel plot:

  • Scatter plot of each study’s effect estimate (x axis) against its standard error or size (y axis, largest studies at the top).
  • Without bias or heterogeneity, the points form a symmetrical inverted funnel around the pooled estimate, with about 95% inside lines at ±1.96 SE.
  • A gap in one lower corner (small studies with unfavourable results) suggests publication or other reporting bias.
  • Other causes of asymmetry: true heterogeneity, poor quality of small studies, chance.
  • Egger’s regression test. Tests should not be used with fewer than 10 studies.

Kaplan-Meier curve: a step graph of the estimated probability of remaining event-free (y axis) against time (x axis). The curve drops at each event, censored patients are marked with ticks, and median survival is read where the curve crosses 0.5. Two curves are compared with the log-rank test. See the risk and survival chapter.

Reporting standards for systematic reviews

MD Community Medicine 2024
  • PRISMA 2020 (Page et al., BMJ 2021): 27-item checklist in seven sections (title, abstract, introduction, methods, results, discussion, other information), an abstract checklist, and flow diagrams for new and updated reviews. Replaced PRISMA 2009, which had replaced QUOROM (1999).
  • Key items: eligibility criteria (5), information sources (6), full search strategy (7), selection process (8), risk of bias assessment (11), synthesis methods (13), reporting bias assessment (14), certainty assessment (15), study selection with flow diagram (16a), registration and protocol (24).
  • PRISMA-P (2015): for reporting protocols.
  • MOOSE (2000): meta-analyses of observational studies.
  • Extensions: PRISMA-ScR for scoping reviews (20 essential and 2 optional items, 2018), PRISMA for network meta-analyses (32 items, 2015), and others for individual patient data and diagnostic accuracy reviews.
  • Note: reporting guidelines check completeness of reporting, not quality. For quality use AMSTAR 2.

Checklist for assessing the quality of a meta-analysis, and critical appraisal of a systematic review and guidelines

MD Community Medicine 2023 · DM Pediatric Neurology 2025

AMSTAR 2 (Shea et al., BMJ 2017): 16 items for systematic reviews of randomised and non-randomised studies. Seven critical domains:

  1. Protocol registered before the review began (item 2)
  2. Adequate literature search (item 4)
  3. Justification for excluding individual studies (item 7)
  4. Risk of bias from individual studies (item 9)
  5. Appropriate meta-analytical methods (item 11)
  6. Risk of bias considered when interpreting results (item 13)
  7. Assessment of publication bias and its likely impact (item 15)

Rating: high (no or one non-critical weakness), moderate (more than one non-critical weakness), low (one critical flaw), critically low (more than one critical flaw). Not an overall score.

Appraising a guideline: AGREE II, 23 items and two overall assessment items. Also ask whether the guideline was based on a systematic review, and how the evidence and recommendations were graded (GRADE: high to very low certainty, strong or weak recommendation).

Evidence-based medicine: definition, steps, tools, strengths and weaknesses, and use in practice

MD Pharmacology 2015, 2025 · DM Neurology 2009 · DM Neonatology 2013, 2024 · MD Community Medicine 2012, 2020

Definition (Sackett et al., BMJ 1996): “the conscientious, explicit, and judicious use of current best evidence in making decisions about the care of individual patients”, integrating clinical expertise with the best external evidence and patients’ choice.

Steps (Sicily statement, 2005): ask, acquire, appraise, apply, assess.

Tools: PICO, PubMed and the Cochrane Library, levels of evidence (OCEBM 2011), GRADE, appraisal tools (RoB 2, ROBINS-I, AMSTAR 2, AGREE II), NNT, likelihood ratios, clinical practice guidelines, audit, decision analysis (decision trees with probabilities and utilities).

StrengthsWeaknesses
Decisions based on the best current evidenceGood evidence is missing for many questions
Reduces unwarranted variation in practiceTrial patients may differ from the patient in front of you
Includes the patient’s valuesTakes time, skills and access to databases
Keeps practice up to date, supports lifelong learningPublished evidence is affected by publication bias and industry funding
Supports guidelines and policyCan be misused as cookbook medicine or for cost-cutting

In practice: in the ward round, a question about one patient is turned into PICO, a pre-appraised source is searched, the result is appraised, discussed with the patient, and the outcome audited.

The practice model of evidence-based medicine

MD Pharmacology 2018
  • Draw three overlapping circles: best research evidence, clinical expertise, patient’s values and choice. The decision lies where they overlap.
  • Sackett (1996): good doctors use both clinical expertise and external evidence, and neither alone is enough. Without expertise, even excellent evidence may not apply to the individual patient. Without evidence, practice becomes out of date.
  • Haynes, Devereaux and Guyatt (2002): the revised model gives more weight to the patient’s clinical circumstances and to the patient’s preferences and actions. Clinical expertise is the skill of combining these with research evidence.
  • Example: whether to anticoagulate a patient with atrial fibrillation depends on trial evidence, the patient’s age and bleeding history, and how much bleeding risk the patient will accept.
  • Carried out through the five steps: ask, acquire, appraise, apply, assess.

Evidence-based medicine is valued higher than meta-analysis: justify

MD Community Medicine 2023
  • A meta-analysis is one source of evidence. EBM is the whole process of using evidence for a patient.
  • EBM combines research evidence with clinical expertise and the patient’s values. A meta-analysis gives an average effect in trial populations only.
  • A meta-analysis can be wrong: publication bias, heterogeneity, poor-quality trials, contradiction by later large trials (intravenous magnesium and ISIS-4).
  • EBM appraises the meta-analysis itself (AMSTAR 2, GRADE) before using it.
  • The revised evidence pyramid (Murad et al., 2016) removes systematic reviews from the top and treats them as a lens for appraising other studies.
  • EBM covers questions a meta-analysis may not answer: diagnosis, prognosis, harm, and the individual patient’s choice.

Levels of evidence, pyramid of evidence, and GRADE of recommendation

MCh Surgical Oncology 2012, 2017 · MCh Urology 2014 · MD Pharmacology 2025 · MD Radio Therapy 2020 · DM Neonatology 2018

Pyramid (draw, from the base up): case series and basic science → cohort and case–control studies → randomised controlled trials → systematic reviews and meta-analyses. Murad et al. (2016) made the lines wavy and moved systematic reviews off the top.

Oxford CEBM 2011, treatment benefits: level 1 systematic review of randomized trials or n-of-1 trials, level 2 randomized trial or observational study with dramatic effect, level 3 non-randomized controlled cohort/follow-up study, level 4 case-series, case-control or historically controlled studies, level 5 mechanism-based reasoning. Levels can be graded down (quality, imprecision, indirectness, inconsistency, small effect) or up (large effect).

GRADE:

  • Certainty of evidence: high, moderate, low, very low.
  • Randomised trials start high, rated down for study limitations, inconsistency, indirectness, imprecision, reporting bias.
  • Observational studies start low, rated up for a very large effect, dose-response, or when plausible biases would reduce the effect.
  • Strength of recommendation: strong or weak (also called conditional). High-quality evidence does not always give a strong recommendation, because the balance of benefits and harms also counts.

Principles, strengths and weaknesses of meta-analysis, randomized controlled trials, cohort studies and case-control studies

DM Clinical Immunology and Rheumatology 2021, 2023
DesignPrincipleStrengthsWeaknesses
Meta-analysisStatistical pooling of results of similar studies, found by a systematic reviewPower, precision, consistency across studies, settles conflictsPublication bias, heterogeneity, depends on quality of included studies
Randomised controlled trialChance allocates treatment, so known and unknown confounders are balancedStrongest single design for cause and effect, blinding possibleCostly, selected patients, short follow-up, rare harms missed, sometimes unethical
Cohort studyExposed and unexposed people followed forward for outcomesIncidence and relative risk, several outcomes, time sequence clearConfounding, loss to follow-up, slow and large for rare outcomes
Case-control studyPeople with and without the disease compared for past exposureQuick, cheap, good for rare diseases, several exposuresRecall and selection bias, only odds ratio, time sequence unclear

See the study designs chapter and the clinical trials chapter for detail.

Meta-analysis and its uses in oncology, and its impact on the management of breast cancer

DM Medical Oncology 1997, 2013
  • Why oncology uses it: many treatments have moderate effects that single trials are too small to detect reliably. Long follow-up and time-to-event outcomes favour pooling individual patient data.
  • Uses: confirm adjuvant treatment benefit, compare regimens, identify which patients benefit (receptor status, age, nodes), estimate long-term effects, detect rare harms, plan new trials, inform guidelines.
  • Breast cancer example: the Early Breast Cancer Trialists’ Collaborative Group (Lancet 2011) analysed individual data of 21,457 women in 20 trials of about 5 years of adjuvant tamoxifen. In ER-positive disease, recurrence was reduced (RR 0.53 in years 0–4, RR 0.68 in years 5–9) and breast cancer mortality was reduced by about a third throughout the first 15 years. In ER-negative disease, tamoxifen had little or no effect.
  • Impact: endocrine therapy is given according to ER status, and the absolute benefit depends on the absolute risk of recurrence.
  • Cautions: heterogeneity of regimens, publication bias, and trial populations that may differ from current patients.

GWAS meta-analysis report in type 2 diabetes

DM Nephrology 2015
  • GWAS: tests a very large number of single nucleotide polymorphisms (SNPs) for association with a disease. Common variants have small effects, so single studies lack power.
  • GWAS meta-analysis: combines the association statistics for each SNP across several studies, often with imputation to a common set of SNPs, followed by replication in independent samples.
  • Example: Zeggini et al. (Nature Genetics, 2008) meta-analysed three type 2 diabetes GWA scans of 10,128 people of European descent with about 2.2 million SNPs, then tested signals in replication samples with an effective size of up to 53,975.
  • Result: at least six previously unknown loci, including JAZF1 (P = 5.0 × 10⁻¹⁴), CDC123-CAMK1D, TSPAN8-LGR5, THADA, ADAMTS9 and NOTCH2.
  • Points to check in such a report: same ancestry or adjustment for population stratification, quality control of genotypes, heterogeneity between cohorts, replication, and correction for multiple testing.

Evidence-based medicine and its levels, and outcome measures in rehabilitation in relation to ICF domains

MD Physical Medicine and Rehabilitation 2022

EBM and levels: definition, five steps and OCEBM 2011 levels as above. In rehabilitation many interventions cannot be blinded, so GRADE rating of certainty is useful alongside the design level.

ICF (WHO, endorsed by the World Health Assembly on 22 May 2001): components are body functions and body structures, activities and participation, environmental factors, and personal factors.

ICF componentExample outcome measures
Body functions and structuresRange of motion, muscle strength grading, pain scores, spasticity scales
ActivitiesBarthel Index, Functional Independence Measure, walking tests
ParticipationReturn to work, community reintegration, quality of life measures
Environmental and personal factorsHome access, assistive devices, social support, motivation

Role of outcome measures: they define the goal of therapy, allow comparison between groups in trials, and let systematic reviews pool results only if studies use comparable measures of the same ICF component.

Assessing the strength of evidence for a treatment in renal therapeutics: primary FSGS in children

DM Nephrology 2002
  1. Assess strength of evidence: design level (OCEBM 2011), then certainty by GRADE (risk of bias, inconsistency, indirectness, imprecision, publication bias), and look for a systematic review or guideline that has already graded it.
  2. Presentation: primary FSGS in children usually presents as steroid-resistant nephrotic syndrome (SRNS).
  3. Guideline: IPNA clinical practice recommendations for SRNS in children (Trautmann et al., Pediatr Nephrol 2020) were based on a systematic review of 9 PICO questions. Evidence was graded A (high) to D (very low), or X, and recommendations as strong, moderate, weak or discretionary.
  4. Kidney biopsy in all children with SRNS, except in listed situations (grade A, strong).
  5. Calcineurin inhibitors (cyclosporine or tacrolimus) as first-line immunosuppression once SRNS is confirmed (grade B, moderate). Stop them if partial remission is not achieved by 6 months (grade B, moderate).
  6. Withhold calcineurin inhibitors in monogenic SRNS (grade B, moderate). Monogenic causes are found in 10–30% of children with SRNS.
  7. If calcineurin inhibitors are unavailable or unaffordable, cyclophosphamide with or without steroids (grade D, weak). Renin-angiotensin blockade at maximum tolerated doses (grade C, weak).
  8. With renin-angiotensin blockade and calcineurin inhibitors, complete or partial remission is achieved in 50–70% of non-genetic cases.

The one thing to remember

Before you trust a pooled result, check how the studies were found, whether they agree, and whether any are missing.

All forest plot, funnel plot, heterogeneity and PRISMA numbers are made-up teaching examples calculated in Python. So are the Simpson's paradox, standardised mean difference and decision analysis examples.

Sources: Pearson K. Report on certain enteric fever inoculation statistics. Br Med J 1904;2:1243–6 (PMID 20761760). O’Rourke K. An historical perspective on meta-analysis. J R Soc Med 2007;100:579–82 (doi:10.1177/0141076807100012020). Glass GV. Primary, secondary, and meta-analysis of research. Educ Res 1976;5(10):3–8 (doi:10.3102/0013189X005010003). Rosenthal R. The file drawer problem and tolerance for null results. Psychol Bull 1979;86:638–41 (doi:10.1037/0033-2909.86.3.638). DerSimonian R, Laird N. Meta-analysis in clinical trials. Control Clin Trials 1986;7:177–88 (doi:10.1016/0197-2456(86)90046-2). Evidence-Based Medicine Working Group. JAMA 1992;268:2420–5 (doi:10.1001/jama.1992.03490170092032). Sackett DL et al. Evidence based medicine: what it is and what it isn’t. BMJ 1996;312:71–2 (doi:10.1136/bmj.312.7023.71). Egger M et al. BMJ 1997;315:629–34 (doi:10.1136/bmj.315.7109.629). Moher D et al. QUOROM statement. Lancet 1999;354:1896–900 (doi:10.1016/S0140-6736(99)04149-5). Stroup DF et al. MOOSE. JAMA 2000;283:2008–12 (doi:10.1001/jama.283.15.2008). Lewis S, Clarke M. Forest plots. BMJ 2001;322:1479–80 (doi:10.1136/bmj.322.7300.1479). Higgins JPT, Thompson SG. Stat Med 2002;21:1539–58 (doi:10.1002/sim.1186). Haynes RB, Devereaux PJ, Guyatt GH. BMJ 2002;324:1350 (doi:10.1136/bmj.324.7350.1350). Altman DG, Deeks JJ. Meta-analysis, Simpson's paradox, and the number needed to treat. BMC Med Res Methodol 2002;2:3 (doi:10.1186/1471-2288-2-3). Higgins JPT et al. Measuring inconsistency in meta-analyses. BMJ 2003;327:557–60 (doi:10.1136/bmj.327.7414.557). Dawes M et al. Sicily statement on evidence-based practice. BMC Med Educ 2005;5:1 (doi:10.1186/1472-6920-5-1). Nüchtern E, Mohrmann M. Med Klin 2006;101:9–14 (doi:10.1007/s00063-006-1002-3). Guyatt GH et al. GRADE. BMJ 2008;336:924–6 (doi:10.1136/bmj.39489.470347.AD). Zeggini E et al. Nat Genet 2008;40:638–45 (doi:10.1038/ng.120). Moher D et al. PRISMA statement. BMJ 2009;339:b2535 (doi:10.1136/bmj.b2535). Brouwers MC et al. AGREE II. CMAJ 2010;182:E839–42 (doi:10.1503/cmaj.090449). Riley RD, Lambert PC, Abo-Zaid G. Meta-analysis of individual participant data. BMJ 2010;340:c221 (doi:10.1136/bmj.c221). Early Breast Cancer Trialists’ Collaborative Group. Lancet 2011;378:771–84 (doi:10.1016/S0140-6736(11)60993-8). Sterne JAC et al. Funnel plot asymmetry. BMJ 2011;343:d4002 (doi:10.1136/bmj.d4002). OCEBM Levels of Evidence Working Group. The Oxford 2011 Levels of Evidence. Oxford Centre for Evidence-Based Medicine. Booth A et al. PROSPERO. Syst Rev 2012;1:2 (doi:10.1186/2046-4053-1-2). Wan X et al. BMC Med Res Methodol 2014;14:135 (doi:10.1186/1471-2288-14-135). Hutton B et al. PRISMA-NMA. Ann Intern Med 2015;162:777–84 (doi:10.7326/M14-2385). Murad MH et al. New evidence pyramid. Evid Based Med 2016;21:125–7 (doi:10.1136/ebmed-2016-110401). Sterne JAC et al. ROBINS-I. BMJ 2016;355:i4919 (doi:10.1136/bmj.i4919). Shea BJ et al. AMSTAR 2. BMJ 2017;358:j4008 (doi:10.1136/bmj.j4008). Tricco AC et al. PRISMA-ScR. Ann Intern Med 2018;169:467–73 (doi:10.7326/M18-0850). Morgan RL et al. Identifying the PECO. Environ Int 2018;121:1027–31 (doi:10.1016/j.envint.2018.07.015). Sterne JAC et al. RoB 2. BMJ 2019;366:l4898 (doi:10.1136/bmj.l4898). Trautmann A et al. IPNA recommendations for steroid-resistant nephrotic syndrome. Pediatr Nephrol 2020;35:1529–61 (doi:10.1007/s00467-020-04519-1). Page MJ et al. PRISMA 2020 statement. BMJ 2021;372:n71 (doi:10.1136/bmj.n71). Cochrane Handbook for Systematic Reviews of Interventions, chapter 10. Cochrane, organisation history page (cochrane.org). World Health Organization, International Classification of Functioning, Disability and Health (resolution WHA54.21, 2001).

Past papers

Every TNMGRMU question on systematic review and meta-analysis

Each one is answered in this chapter. Tap a sitting to open the university's own question paper.

  1. ×18Meta analysisMCh Surgical Oncology · Feb 2023MD Pharmacology · Oct 2022MD Radio Therapy · Oct 2022MD Community Medicine · Oct 2022DM Medical Oncology · Feb 2022MCh Surgical Oncology · Feb 2022Ph.D. RM · Jul 2022MD Radio Therapy · Jul 2021MD Pharmacology · Oct 2019MCh Surgical Oncology · Aug 2019MD Pharmacology · May 2017MD Community Medicine · Apr 2016Ph.D. RM · Jan 2015MCh Surgical Oncology · Feb 2011MCh Surgical Oncology · Feb 2010MCh Surgical Oncology · Feb 2010DM Medical Oncology · Feb 2009DM Medical Oncology · Apr 1996
  2. ×3Evidence Based MedicineMD Pharmacology · May 2025MD Pharmacology · Apr 2015DM Neurology · Aug 2009
  3. ×3Forest plotDM Neonatology · Aug 2023DM Medical Oncology · Aug 2019DM Neonatology · Aug 2012
  4. ×3Levels of evidenceMCh Surgical Oncology · Feb 2017MCh Urology · Feb 2014MCh Surgical Oncology · Feb 2012
  5. ×2Write briefly on principles, strengths and weaknesses of meta-analysis, randomized controlled trials, cohort studies and case controlled studiesDM Clinical Immunology and Rheumatology · Feb 2023DM Clinical Immunology and Rheumatology · Aug 2021
  6. ×1Draw a Pyramid of levels of evidence in evidence-based medicineMD Pharmacology · Oct 2025
  7. ×1Discuss critical appraisal of a systematic review and guidelinesDM Pediatric Neurology · Feb 2025
  8. ×1Discuss the reporting standard for systematic reviewMD Community Medicine · Oct 2024
  9. ×1Define systematic review. Explain the steps of conducting systematic review. Compare and contrast Systematic and narrative reviewMD Community Medicine · Oct 2024
  10. ×1What is systematic review and meta-analysis? Describe the process, merits and limitations of meta-analysisDM Pulmonary Medicine · Jan 2024
  11. ×1Discuss Evidence Based Medicine and its strength and weaknessesDM Neonatology · Jan 2024
  12. ×1Kaplan Meier curve and Funnel plotDM Neonatology · Jan 2024
  13. ×1Interpretation of a Forest PlotDM Endocrinology · Aug 2024
  14. ×1Describe the steps in conducting Meta-Analysis and sources of bias in Meta - Analysis. How is Heterogenecity between studies addressed during analysis?MD Community Medicine · Oct 2023
  15. ×1Evidence based medicine is valued higher than Meta analysis –JustifyMD Community Medicine · Oct 2023
  16. ×1Checklist for assessing quality of meta-analysis – discuss in briefMD Community Medicine · May 2023
  17. ×1Define Evidence based medicine and their levels. Discuss the role of Outcome measures in Rehabilitations in relation to ICF DomainsMD Physical Medicine and Rehabilitation · May 2022
  18. ×1Systematic Review vs narrator reviewMD Community Medicine · Oct 2022
  19. ×1Describe Meta analysis and how to conduct and analyze the Meta analysisDM Neonatology · Feb 2022
  20. ×1List the levels of evidence. What is meta-analysis? Explain meta-analysis with an exampleMD Radio Therapy · Nov 2020
  21. ×1What is Evidence based medicine? Discuss various tools used in Evidence based medicineMD Community Medicine · Aug 2020
  22. ×1What is a systematic review? Enumerate and discuss the steps required in writing a good systematic reviewDM Neonatology · Feb 2020
  23. ×1How do you conduct Meta Analysis and explain it with an example?Ph.D. RM · Dec 2020
  24. ×1Describe the steps involved in conducting a meta-analysisPh.D. RM · Jan 2019
  25. ×1Practice of evidence based medicine modelMD Pharmacology · May 2018
  26. ×1Levels of evidence and GRADE of recommendationDM Neonatology · Feb 2018
  27. ×1Systemic reviewPh.D. RM · Jul 2016
  28. ×1GWAS meta-analysis report in T2DMDM Nephrology · Feb 2015
  29. ×1Evidence based medicine? Describe strength and weakness of evidence based medicineDM Neonatology · Aug 2013
  30. ×1Meta-analysis and its uses in oncologyDM Medical Oncology · Aug 2013
  31. ×1(a) Explain what is meant by ‘Multivariate Analysis’. (b) Explain in detail Partial Least Square Regression. (c) Explain what is Meta Analysis, the steps of Meta Analysis, the methods and assumptions of Meta AnalysisPh.D. RM · Jul 2013
  32. ×1Evidence Based Medicine in Medical PracticeMD Community Medicine · Oct 2012
  33. ×1Pitfalls in meta analysisMCh Surgical Oncology · Aug 2008
  34. ×1Meta analysiaMCh Surgical Oncology · Apr 2004
  35. ×1What is Evidence Based Medicine? How will you assess the strength of evidence for a treatment option in renal therapeutics? Describe the various treatment options and the quality of evidence of available therapy in primary FSGSin ChildrenDM Nephrology · Mar 2002
  36. ×1Prion (4d) Meta analysisDM Neurology · Apr 1997
  37. ×1What is meta analysis? Discuss its impact on current management of breast cancerDM Medical Oncology · Apr 1997
  38. ×1How would you assess quality of life in cancer patients after therapy? (25) 1 3. Write short notes on: (a) Taxol. (b) Fludarabine. (c) Peripheral blood stem cell transplants. d) P53. (c) Meta Analysis. (05=01XS)DM Medical Oncology · Nov 1993
  39. ×1Role of meta analysis in researchMD Community Medicine