OT notes · General Surgery

Pilonidal sinus excision (with primary / flap closure)

Usual anaesthesia
Spinal or general; local infiltration with adrenaline for limited procedures (pit excision, Bascom)
Position
Prone jackknife with buttocks strapped apart
Setting
elective

Operative note template for excision of a sacrococcygeal pilonidal sinus with primary, flap or open closure, with a filled example for rhomboid excision and Limberg flap under spinal anaesthesia.

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Blank template

Follow this order in the case sheet. Tick the options that apply and fill the blanks.

Patient and case

  1. Name / Age / Sex
  2. UHID / IP no. / Ward-Bed
  3. Date of surgery / OT no.
  4. CaseElectiveEmergency (non-elective)if emergency, state urgency and reason
  5. Timesin OT ___ anaesthesia start ___ incision ___ closure ___ out of OT ___

Team

  1. Operating surgeonname, designation
  2. Assistant(s)
  3. Supervising consultantpresent in OT / available / not applicable
  4. Steps done by the residentwhole procedure / named steps, under whose supervision
  5. Anaesthetist
  6. Scrub nurse / circulating nurse

Diagnosis and procedure

  1. Pre-operative diagnosis
  2. Post-operative diagnosis
  3. Procedure planned
  4. Procedure performedif different from plan, state why
  5. Extra procedure done and reason'none' if none. Only to save life or health if not consented

Consent and safety checks

  1. Informed consentGeneralProcedure-specificHigh-riskAnaesthesiain a language the patient understands: language ___ witness ___
  2. Site / side markedYesNot applicable
  3. WHO Surgical Safety ChecklistSign inTime outSign out
  4. Antibiotic prophylaxisdrug, dose, route, time given before incision
  5. VTE prophylaxisMechanicalPharmacologicalNot indicated

Risks to explain in the consent for this operation

  • wound infection and wound breakdown
  • recurrence of the sinus
  • bleeding or haematoma under the flap
  • seroma or collection needing drainage
  • flap tip necrosis
  • slow healing of an open wound, needing weeks of dressings
  • numbness and a visible scar over the buttock

Pre-operative details for this operation

  1. Disease statusChronic sinus, no active infectionRecurrent after previous surgeryAcute abscess (drain first; definitive surgery later)
  2. Midline pits and lateral openings on examinationnumber of pits, side and distance of secondary openings from midline
  3. Previous drainage or excisiondates, type, where the scars are
  4. Planned procedure and closureLimberg (rhomboid) flapKarydakis flapZ-plastyModified BascomExcision with primary midline closureExcision laid open / marsupialisation
  5. Blood sugar and other risk factors for poor healingdiabetes, smoking, obesity
  6. Area shaved and flap markedmarking done before strapping, with measurements

Anaesthesia and position

  1. AnaesthesiaSpinalGeneralLocal infiltration with lignocaine and adrenaline 1:200,000Local with sedation
  2. PositionProne jackknifebuttocks strapped apart with adhesive tape; note pressure points padded

Operative findings

  1. Midline pitsnumber and distance from anal verge
  2. Tracts and secondary openingsdirection (cranial / caudal), side, lateral extensions
  3. Cavity contentsHair and granulation tissuePusEpithelial liningOther
  4. Depth of diseasesubcutaneous only / down to post-sacral fascia
  5. Size of excised tissuelength x width x depth in cm

Procedure (steps)

  1. Buttocks strapped apart, area preparedantiseptic used
  2. Tracts outlinedMethylene blue injectedMethylene blue with hydrogen peroxideProbe only
  3. ExcisionRhomboid excision including all pits and tractsAsymmetric ellipse 2 cm off midline (Karydakis)Midline ellipse (primary closure / Z-plasty)Pit excision with lateral incision (Bascom)Tracts laid open and curetteddepth: to, but not including, the deep fascia
  4. All stained tissue and tracts removedYesResidual tract left (reason)
  5. HaemostasisBipolar cauteryMonopolar cauteryLigatures
  6. Flap raised (if flap closure)type, layers included (skin, fat, gluteal fascia), dimensions; bipolar or No. 15 blade to protect flap blood supply
  7. Straps released before closureYes
  8. Flap transposed or rotated into the defectdonor defect closed primarily
  9. Marsupialisation / open wound (if not closed)skin edges sutured to the cavity base with absorbable suture, wound packed

Closure, drains and dressing

  1. DrainClosed suction drain under flapNone (open wound)size, exit site
  2. Deep layerabsorbable suture to fat and fascia, material and size
  3. SkinInterrupted non-absorbable (e.g. polypropylene (Prolene) 3-0)SubcuticularLeft open and packed
  4. Final scar positionOff the midlineIn the midline
  5. DressingPressure dressingPack / wick in open wound

Specimens and implants

  1. Excised sinus tissue sent for HPEYesNo (curettings only)orientation mark if needed
  2. Pus sent for culture and sensitivityYesNo pus

End of procedure

  1. Estimated blood lossml
  2. IV fluids and blood / products givenfluids (ml); blood: type, units, bag nos.
  3. Swab, needle and instrument countCorrectIncorrect: action taken
  4. Intra-operative complications / difficultieswhat happened and what was done; 'none' if none
  5. Implant stickersNo implantAffixed in case sheet, OT register and for discharge summary
  6. Condition at end of surgery / shifted toPACUWardICU/HDU

Post-operative orders

  1. Dressing checklook for soakage or swelling under the flap
  2. Drain outputrecord daily; removal criteria
  3. Analgesiadrug, dose, frequency
  4. Antibioticdrug, dose and number of doses, or none
  5. Open wound carepack or wick removal day, dressing change plan
  6. Mobilisationwalk from the same day or next morning
  7. Suture removalday planned
  8. Hair control after healingregular shaving or hair removal of the natal cleft, local hygiene
  9. Follow-upOPD date, HPE report, watch for recurrence

Signature

  1. Name and designation of person writing note
  2. Medical Council registration no.
  3. Signature / date / time of writingwrite before the patient leaves recovery

Worked example

Fictional case: Mr. S.R., 23 years, 2-year history of recurrent discharge from the natal cleft, 3 midline pits and one secondary opening on the left, abscess drained 6 months ago, no active infection now.

Case details

Date: 18/05/2026. Elective. OT 1.

In OT 09:10. Spinal given 09:18. Incision 09:40. Closure completed 10:35.

Surgeon: Dr A. (3rd-year resident, General Surgery). Assistant: Dr B. (1st-year resident). Consultant: Dr C., present in OT.

Anaesthetist: Dr D. Scrub nurse: Sr E.

Indication and pre-op

Indication: chronic recurrent sacrococcygeal pilonidal sinus with 3 midline pits and a left lateral opening. Previous incision and drainage 6 months ago.

RBS 98 mg/dl. Non-smoker. Area shaved the night before.

Consent: general, procedure-specific and anaesthesia consent taken in Hindi. Recurrence, flap necrosis and wound infection explained.

Rhomboid marked on the natal cleft with measurements before strapping.

WHO checklist sign in and time out done. Inj amoxicillin-clavulanate 1.2 g IV at induction, 09:20.

Anaesthesia and position

Under spinal anaesthesia, patient prone jackknife. Buttocks strapped apart with adhesive tape. Pressure points padded. Parts painted with povidone-iodine and draped.

Findings

Three midline pits, 5 to 7 cm from the anal verge. Left lateral secondary opening 3 cm from midline.

Cavity with a tuft of hair and granulation tissue, extending 4 cm cranially. No pus.

Disease confined to subcutaneous fat, not reaching the post-sacral fascia.

Procedure

Methylene blue injected through the midline pit. Tracts stained up to the left secondary opening.

Rhomboid of skin and fat, about 8 x 5 cm, excised with its long axis in the midline, including all pits, stained tracts and the lateral opening. Excision carried down to the post-sacral fascia, fascia left intact.

Haemostasis with bipolar cautery.

Limberg flap marked on the right buttock and raised with skin, fat and gluteal fascia, using No. 15 blade and bipolar cautery.

Straps released. Flap rotated into the defect without tension.

Closure

Closed suction drain placed under the flap, brought out through a separate stab laterally.

Deep layer closed with interrupted polyglactin 910 (Vicryl) 2-0, first sutures at the corners.

Skin closed with interrupted polypropylene (Prolene) 3-0. Final scar off the midline.

Pressure dressing applied.

Specimens

Excised sinus tissue in formalin, sent for HPE. Labelled with name, age, IP number and site.

End of procedure

Estimated blood loss 80 ml. No transfusion.

Mop, needle and instrument count correct, confirmed by scrub nurse.

No intra-operative complications.

Shifted to ward in stable condition. Pulse 82/min, BP 120/76 mmHg.

Post-op orders

Watch dressing for soakage. Record drain output every 24 hours.

Inj amoxicillin-clavulanate 1.2 g IV 12-hourly for two more doses.

Tab paracetamol 1 g orally 6-hourly for 3 days once taking orally.

Oral fluids 4 hours after surgery, normal diet after that. Walk from next morning.

Drain removal and suture removal day to be decided by the unit. Review in surgery OPD with HPE report.

Advise regular shaving of the natal cleft after the wound heals.

Signature

Dr A., JR-3, General Surgery. Reg. no. ________. 18/05/2026, 10:50.

Must document for this operation

  • Number and site of pits and secondary openings, and previous scars. Recurrence is common, and the next surgeon needs to know what was there and what was removed.
  • Type of excision and closure, with dimensions. A midline scar recurs more often than an off-midline flap, so the method explains later results and guides redo surgery.
  • Whether all stained tracts were excised. A tract left behind is a common reason for recurrence and must be on record.
  • Drain type and site, or that the wound was left open and packed. The ward team needs this to plan drain removal or daily dressings.
  • Antibiotic given, dose and number of doses. Wound infection is the main early complication, and the audit will ask what cover was given.
  • Specimen sent for histopathology (HPE). The pathologist confirms pilonidal disease and rules out rare lesions in long-standing sinuses.

Common mistakes in these notes

  • Writing 'excision done' without the closure method or the final scar position.
  • Not recording the number of pits and lateral openings.
  • Leaving out the drain, or the day for its removal.
  • Not noting that the straps were released before closure of a flap.
  • Forgetting to write hair-control advice at discharge.

Indian practice and paperwork

  • Bio-Medical Waste Management Rules 2016 put excised human tissue in Yellow category (a) human anatomical waste, and discarded formalin is chemical waste. Write where the specimen went: sent for HPE in formalin, given to relatives with a note, or discarded as Yellow (a) waste. (DGHS/CPCB Guidelines for Management of Healthcare Waste as per BMW Rules 2016)

Sources

  • Moran B, Mittal R, Lord A, eds. Farquharson's Textbook of Operative General Surgery. 11th ed. CRC Press; 2026, Ch 15, Surgery of the anus and perineum: Pilonidal sinus surgery, pp. 328-330.
  • Bhat SM. SRB's Surgical Operations: Text and Atlas. Jaypee; 2014, Ch 25, Anorectal surgeries: Treatment of pilonidal sinus, pp. 1008-1015.
  • Scott-Conner CEH, ed. Scott-Conner and Dawson Essential Operative Techniques and Anatomy. 4th ed. Wolters Kluwer; 2014, Ch 121, Pilonidal cystectomy, pp. 651-655.
  • Singla SK, Mital K. Operative Manual of Minimally Invasive and LASER Ano-proctology. Springer; 2025, Ch 20 (pit picking) and Ch 22, Bascom 1, pp. 215, 225-229.
  • NHS. How and when to take paracetamol for adults (1 g per dose, at least 4 hours apart, not more than 4 g in 24 hours). www.nhs.uk/medicines/paracetamol-for-adults/how-and-when-to-take-paracetamol-for-adults/

Educational template for residents. Adapt it to your institution's case-sheet format and your consultant's instructions. Patient details in the example are fictional.

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