AI in Pathology

Pathology AI depends on whole-slide scanning, so it is strongest where labs are digital. Tools for prostate biopsy grading and cancer detection are in use in some labs. Foundation models trained on millions of slide tiles are the main research direction.

What AI does in Pathology

Prostate biopsy detection and gradingearly adoption

Marks suspicious areas and suggests Gleason grade for the pathologist to confirm.

Examples: Paige Prostate

Metastasis detection in lymph nodesearly adoption

Finds small tumour deposits in sentinel nodes, a task tested in the CAMELYON challenges.

Examples: CAMELYON-trained algorithms

Cell counting and scoring of IHCearly adoption

Counts Ki-67, HER2 or PD-L1 positive cells more consistently than eyeballing.

Examples: QuPath (open-source), commercial image analysis

Slide quality and case triageearly adoption

Flags out-of-focus slides and sorts cases by likely urgency.

Examples: Workflow tools from slide-scanner vendors

Biomarker prediction from H&Eresearch

Predicts molecular features such as MSI status from routine slides. Used to prioritise testing, not replace it.

Examples: UNI, CONCH, Virchow

Vision-language search of slidesresearch

Search a slide archive with text such as signet ring cells.

Examples: CONCH

routine = in everyday use in many centres · early adoption = in use at some sites, evidence still building · research = studies only

Key ideas for this specialty

Whole-slide image (WSI): A glass slide scanned into a very large digital image, often several gigapixels. AI works on this file, not on the glass.
Tiles / patches: The slide is cut into many small squares because the whole image is too big for a model to read at once.
Multiple instance learning: The model learns from one label for the whole slide, such as tumour present, without anyone outlining the tumour.
Foundation model: A large model pre-trained on huge numbers of slides without labels. It is then adapted to many tasks, such as subtyping or biomarker prediction.
Stain variation: Slides from different labs look different in colour. Models can fail when they meet a new stain.

New to the basics? Start with the theory lessons.

Tools

QuPathfree

Free open-source software for whole-slide image analysis.

Regulatory status: Not listed

CLAMfree

Open-source weakly supervised slide classification code from the Mahmood lab.

Regulatory status: Not listed

UNIfree

Open pathology foundation model from the Mahmood lab (access terms apply).

Regulatory status: Not listed

CONCHfree

Open vision-language pathology foundation model.

Regulatory status: Not listed

Lymph node metastasis dataset and benchmark.

Regulatory status: Not listed

Paigeinstitutional

Commercial pathology AI company with prostate and other cancer tools.

Regulatory status: Not listed

Prosciainstitutional

Digital pathology platform with AI applications.

Regulatory status: Not listed

A listing here is not an endorsement. Ask any vendor for its CDSCO licence and class before clinical use.

Where to learn

QuPath projectcoursefreebeginner

Learn slide analysis on a free tool.

Grand Challengearticlefreeadvanced

See how a pathology AI benchmark is built.

Nature Reviews BioengineeringarticleNot listedintermediate

Broad review by Song and colleagues.

Nature CancerarticleNot listedintermediate

Explains tasks from detection to outcome prediction.

Nature Reviews Clinical OncologyarticleNot listedbeginner

Good first read on the field.

DeepLearning.AI on CourseracourseNot listedintermediate

General medical AI grounding.

Do it yourself

Open a slide in QuPath

Download QuPath, open a public whole-slide image, and run the built-in cell detection. Compare the counts with a manual count on one region.

Open the dataset or tool →
Look at the CAMELYON data

Read the CAMELYON17 task page and view example slides with tumour annotations. Write down how many cases the training set holds and how labels were made.

Open the dataset or tool →

Use public or properly de-identified data only, and get ethics approval before any project on your own patients.

Papers worth reading

Societies and guidance

Source of open pathology foundation models; a research lab, not a society.

Open challenge platform used by pathology AI groups.

Recent updates

10 Aug 2026
India

FICCI-Praxis report names AI diagnostics as the first large-scale medtech use in India

The report 'AI in MedTech' was released by Union Health Minister J.P. Nadda at India Medical Device 2026. It lists data readiness, regulation and reimbursement as the three gaps between pilots and wide use.

Source: Medical Dialogues
13 Jan 2026
Tools

Google releases MedGemma 1.5 and MedASR as open models

MedGemma 1.5 4B reads CT, MRI and histopathology images and runs locally, and MedASR is a medical dictation speech model that Google says makes 58% fewer errors on chest X-ray dictation than general models.

Source: Google Research
All updates →

Links checked 3 October 2026. “Not listed” means we could not confirm the detail, not that it is absent. Educational material, not clinical advice.